Results# AniResult# class pysylph.AniResult# An querying result. ani# The coverage-corrected containment ANI, as a percentage. Type: float ani_naive# The containment ANI without adjustment, as a percentage. Type: float coverage# An estimate of the effective, or the true coverage. Type: float genome_sketch# A reference to the genome sketch. Type: GenomeSketch ProfileResult# class pysylph.ProfileResult# A profiling result. ani# The coverage-corrected containment ANI, as a percentage. Type: float ani_naive# The containment ANI without adjustment, as a percentage. Type: float coverage# An estimate of the effective, or the true coverage. Type: float genome_sketch# A reference to the genome sketch. Type: GenomeSketch kmers_reassigned# The number of k-mers reassigned away from the genome. Type: int sequence_abundance# The normalized sequence abundance, as a percentage. This is the percentage of reads assigned to each genome, similar to how Kraken computes abundance. Type: float taxonomic_abundance# The normalized taxonomic abundance, as a percentage. Coverage-normalized - same as MetaPhlAn abundance This is the coverage-normalized abundanced, similar to how MetaPhlAn computes abundance. Type: float
